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Hafnium in PDB 1o7t: Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae.

Protein crystallography data

The structure of Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae., PDB code: 1o7t was solved by D.Alexeev, H.Zu, M.Guo, W.Zhong, D.J.B.Hunter, W.Yang, D.J.Campopiano, P.J.Sadler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.65
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 148.128, 148.128, 115.842, 90.00, 90.00, 120.00
R / Rfree (%) 16.4 / 26.2

Hafnium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 43;

Binding sites:

The binding sites of Hafnium atom in the Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae. (pdb code 1o7t). This binding sites where shown within 5.0 Angstroms radius around Hafnium atom.
In total 43 binding sites of Hafnium where determined in the Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae., PDB code: 1o7t:
Jump to Hafnium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Hafnium binding site 1 out of 43 in 1o7t

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Hafnium binding site 1 out of 43 in the Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae.


Mono view


Stereo pair view

A full contact list of Hafnium with other atoms in the Hf binding site number 1 of Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hf1310

b:33.3
occ:1.00
HFA A:HF51310 0.0 33.3 1.0
OH A:TYR196 2.0 34.4 1.0
O00 A:HF51310 2.2 66.1 1.0
OAD A:HF51310 2.3 86.3 1.0
OAE A:HF51310 2.5 56.6 1.0
OAB A:HF51310 2.5 42.4 1.0
OAC A:HF51310 2.5 34.3 1.0
OA1 A:HF51310 2.5 37.1 1.0
CZ A:TYR196 3.3 31.2 1.0
HFD A:HF51310 3.7 65.1 1.0
HFC A:HF51310 3.7 44.4 1.0
HFB A:HF51310 3.8 43.8 1.0
OE2 A:HF51310 3.9 99.5 1.0
CE2 A:TYR196 4.0 30.3 1.0
CE1 A:TYR196 4.3 30.5 1.0
OBD A:HF51310 4.3 55.4 1.0
OCD A:HF51310 4.4 53.4 1.0
HFE A:HF51310 4.5 99.5 1.0
ODE A:HF51310 4.5 99.5 1.0
ND2 A:ASN175 4.8 27.7 1.0
OB2 A:HF51310 4.8 25.8 1.0
OBC A:HF51310 5.0 64.2 1.0

Hafnium binding site 2 out of 43 in 1o7t

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Hafnium binding site 2 out of 43 in the Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae.


Mono view


Stereo pair view

A full contact list of Hafnium with other atoms in the Hf binding site number 2 of Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hf1310

b:43.8
occ:1.00
HFB A:HF51310 0.0 43.8 1.0
OBD A:HF51310 2.2 55.4 1.0
O00 A:HF51310 2.2 66.1 1.0
OBC A:HF51310 2.4 64.2 1.0
OAB A:HF51310 2.5 42.4 1.0
OB1 A:HF51310 2.6 39.3 1.0
OB3 A:HF51310 2.7 46.7 1.0
OB2 A:HF51310 2.8 25.8 1.0
HFC A:HF51310 3.6 44.4 1.0
HFA A:HF51310 3.8 33.3 1.0
OAD A:HF51310 3.9 86.3 1.0
HFD A:HF51310 4.0 65.1 1.0
ND2 A:ASN175 4.4 27.7 1.0
OH A:TYR196 4.4 34.4 1.0
O A:HOH2252 4.5 45.0 1.0
OG A:SER139 4.5 27.1 1.0
OA1 A:HF51310 4.6 37.1 1.0
N A:GLY140 4.6 27.0 1.0
OCD A:HF51310 4.7 53.4 1.0
ND2 A:ASN193 4.7 26.2 1.0
OH A:TYR195 4.8 29.1 1.0
N A:ALA141 4.9 26.4 1.0
OAC A:HF51310 4.9 34.3 1.0

Hafnium binding site 3 out of 43 in 1o7t

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Hafnium binding site 3 out of 43 in the Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae.


Mono view


Stereo pair view

A full contact list of Hafnium with other atoms in the Hf binding site number 3 of Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hf1310

b:44.4
occ:1.00
HFC A:HF51310 0.0 44.4 1.0
OH A:TYR195 2.1 29.1 1.0
O00 A:HF51310 2.2 66.1 1.0
OCD A:HF51310 2.3 53.4 1.0
OBC A:HF51310 2.5 64.2 1.0
OC1 A:HF51310 2.5 63.6 1.0
OAC A:HF51310 2.6 34.3 1.0
OC2 A:HF51310 3.2 40.7 1.0
CZ A:TYR195 3.3 25.3 1.0
HFB A:HF51310 3.6 43.8 1.0
HFD A:HF51310 3.7 65.1 1.0
HFA A:HF51310 3.7 33.3 1.0
CE2 A:TYR195 3.8 24.4 1.0
OH A:TYR196 3.9 34.4 1.0
O A:HOH2252 4.0 45.0 1.0
OBD A:HF51310 4.1 55.4 1.0
OAD A:HF51310 4.2 86.3 1.0
CE1 A:TYR195 4.4 24.0 1.0
CE1 A:TYR196 4.5 30.5 1.0
CZ A:TYR196 4.6 31.2 1.0
O A:HOH2253 4.7 33.9 1.0
OAB A:HF51310 4.7 42.4 1.0
OB3 A:HF51310 4.8 46.7 1.0
NH2 A:ARG262 4.8 29.0 1.0
OAE A:HF51310 4.8 56.6 1.0
ND2 A:ASN193 4.9 26.2 1.0
ODE A:HF51310 4.9 99.5 1.0

Hafnium binding site 4 out of 43 in 1o7t

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Hafnium binding site 4 out of 43 in the Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae.


Mono view


Stereo pair view

A full contact list of Hafnium with other atoms in the Hf binding site number 4 of Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hf1310

b:65.1
occ:1.00
HFD A:HF51310 0.0 65.1 1.0
OAD A:HF51310 1.9 86.3 1.0
ODE A:HF51310 2.4 99.5 1.0
OBD A:HF51310 2.5 55.4 1.0
OCD A:HF51310 2.5 53.4 1.0
OD2 A:HF51310 2.7 68.5 1.0
OD1 A:HF51310 2.7 89.4 1.0
O00 A:HF51310 3.5 66.1 1.0
HFA A:HF51310 3.7 33.3 1.0
HFC A:HF51310 3.7 44.4 1.0
OAC A:HF51310 3.9 34.3 1.0
OE2 A:HF51310 3.9 99.5 1.0
HFB A:HF51310 4.0 43.8 1.0
HFE A:HF51310 4.1 99.5 1.0
OBC A:HF51310 4.2 64.2 1.0
OAE A:HF51310 4.2 56.6 1.0
OAB A:HF51310 4.3 42.4 1.0
O A:HOH2252 4.8 45.0 1.0
OB2 A:HF51310 4.8 25.8 1.0
OC2 A:HF51310 5.0 40.7 1.0

Hafnium binding site 5 out of 43 in 1o7t

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Hafnium binding site 5 out of 43 in the Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae.


Mono view


Stereo pair view

A full contact list of Hafnium with other atoms in the Hf binding site number 5 of Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Hf1310

b:99.5
occ:1.00
HFE A:HF51310 0.0 99.5 1.0
ODE A:HF51310 2.1 99.5 1.0
OE1 A:HF51310 2.4 85.9 1.0
OE3 A:HF51310 2.5 84.2 1.0
OE4 A:HF51310 2.5 99.5 1.0
OE2 A:HF51310 2.5 99.5 1.0
OAE A:HF51310 2.6 56.6 1.0
OAD A:HF51310 3.7 86.3 1.0
O A:HOH2254 4.0 33.0 1.0
HFD A:HF51310 4.1 65.1 1.0
OAC A:HF51310 4.1 34.3 1.0
HFA A:HF51310 4.5 33.3 1.0
OD2 A:HF51310 4.7 68.5 1.0
O A:HOH2256 4.8 31.1 1.0
OCD A:HF51310 4.8 53.4 1.0

Hafnium binding site 6 out of 43 in 1o7t

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Hafnium binding site 6 out of 43 in the Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae.


Mono view


Stereo pair view

A full contact list of Hafnium with other atoms in the Hf binding site number 6 of Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hf1310

b:38.5
occ:1.00
HFA B:HF51310 0.0 38.5 1.0
OH B:TYR196 2.0 36.1 1.0
O00 B:HF51310 2.2 67.8 1.0
OAE B:HF51310 2.3 62.2 1.0
OAD B:HF51310 2.3 73.4 1.0
OAC B:HF51310 2.4 50.5 1.0
OAB B:HF51310 2.5 47.6 1.0
OA1 B:HF51310 2.7 51.3 1.0
CZ B:TYR196 3.3 33.3 1.0
HFD B:HF51310 3.5 76.1 1.0
HFB B:HF51310 3.8 43.1 1.0
HFC B:HF51310 3.8 44.6 1.0
HFE B:HF51310 4.0 99.5 1.0
OBD B:HF51310 4.1 55.1 1.0
CE1 B:TYR196 4.1 32.4 1.0
O B:HOH2215 4.1 38.0 1.0
O B:HOH2219 4.2 29.7 1.0
CE2 B:TYR196 4.3 33.2 1.0
O B:HOH2220 4.3 20.5 1.0
ODE B:HF51310 4.4 95.3 1.0
O B:HOH2214 4.5 49.2 1.0
OCD B:HF51310 4.5 70.8 1.0
OE1 B:HF51310 4.6 61.5 1.0
OE2 B:HF51310 4.6 99.5 1.0
OH B:TYR195 4.9 33.2 1.0

Hafnium binding site 7 out of 43 in 1o7t

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Hafnium binding site 7 out of 43 in the Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae.


Mono view


Stereo pair view

A full contact list of Hafnium with other atoms in the Hf binding site number 7 of Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hf1310

b:43.1
occ:1.00
HFB B:HF51310 0.0 43.1 1.0
OBD B:HF51310 2.2 55.1 1.0
O00 B:HF51310 2.3 67.8 1.0
OBC B:HF51310 2.4 75.2 1.0
OB2 B:HF51310 2.5 56.6 1.0
OB1 B:HF51310 2.6 28.6 1.0
OAB B:HF51310 2.6 47.6 1.0
OB3 B:HF51310 2.7 47.4 1.0
HFC B:HF51310 3.7 44.6 1.0
HFA B:HF51310 3.8 38.5 1.0
HFD B:HF51310 4.0 76.1 1.0
OCD B:HF51310 4.1 70.8 1.0
OAD B:HF51310 4.3 73.4 1.0
OG B:SER139 4.4 30.2 1.0
N B:GLY140 4.5 26.5 1.0
O B:HOH2219 4.5 29.7 1.0
ND2 B:ASN193 4.7 26.2 1.0
N B:ALA141 4.7 23.1 1.0
OAC B:HF51310 4.7 50.5 1.0
O B:HOH2220 4.7 20.5 1.0
OC1 B:HF51310 4.8 34.3 1.0
ND2 B:ASN175 4.8 34.3 1.0
O B:HOH2216 4.8 32.9 1.0
OH B:TYR196 4.8 36.1 1.0
OH B:TYR195 4.9 33.2 1.0
CA B:GLY140 5.0 23.6 1.0

Hafnium binding site 8 out of 43 in 1o7t

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Hafnium binding site 8 out of 43 in the Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae.


Mono view


Stereo pair view

A full contact list of Hafnium with other atoms in the Hf binding site number 8 of Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hf1310

b:44.6
occ:1.00
HFC B:HF51310 0.0 44.6 1.0
OH B:TYR195 2.1 33.2 1.0
OCD B:HF51310 2.2 70.8 1.0
O00 B:HF51310 2.2 67.8 1.0
OAC B:HF51310 2.5 50.5 1.0
OC2 B:HF51310 2.6 30.9 1.0
OBC B:HF51310 2.6 75.2 1.0
OC1 B:HF51310 2.7 34.3 1.0
CZ B:TYR195 3.3 31.9 1.0
HFB B:HF51310 3.7 43.1 1.0
HFD B:HF51310 3.7 76.1 1.0
HFA B:HF51310 3.8 38.5 1.0
CE2 B:TYR195 3.9 31.7 1.0
OBD B:HF51310 4.0 55.1 1.0
CE1 B:TYR195 4.4 31.6 1.0
O B:HOH2218 4.4 31.5 1.0
OH B:TYR196 4.4 36.1 1.0
O B:HOH2217 4.6 31.7 1.0
CE1 B:TYR196 4.6 32.4 1.0
ND2 B:ASN193 4.7 26.2 1.0
OD1 B:HF51310 4.8 99.5 1.0
OB1 B:HF51310 4.8 28.6 1.0
OAD B:HF51310 4.8 73.4 1.0
OAB B:HF51310 4.9 47.6 1.0
NH2 B:ARG262 4.9 30.3 1.0
CZ B:TYR196 4.9 33.3 1.0

Hafnium binding site 9 out of 43 in 1o7t

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Hafnium binding site 9 out of 43 in the Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae.


Mono view


Stereo pair view

A full contact list of Hafnium with other atoms in the Hf binding site number 9 of Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hf1310

b:76.1
occ:1.00
HFD B:HF51310 0.0 76.1 1.0
OAD B:HF51310 2.3 73.4 1.0
ODE B:HF51310 2.3 95.3 1.0
OCD B:HF51310 2.4 70.8 1.0
OBD B:HF51310 2.4 55.1 1.0
OD2 B:HF51310 2.7 99.5 1.0
OD1 B:HF51310 2.7 99.5 1.0
HFA B:HF51310 3.5 38.5 1.0
O00 B:HF51310 3.6 67.8 1.0
OAC B:HF51310 3.7 50.5 1.0
HFC B:HF51310 3.7 44.6 1.0
HFE B:HF51310 3.8 99.5 1.0
HFB B:HF51310 4.0 43.1 1.0
OAE B:HF51310 4.2 62.2 1.0
O B:HOH2218 4.5 31.5 1.0
OAB B:HF51310 4.5 47.6 1.0
OBC B:HF51310 4.7 75.2 1.0
OC2 B:HF51310 4.8 30.9 1.0
OE2 B:HF51310 4.8 99.5 1.0
OA1 B:HF51310 4.8 51.3 1.0
OC1 B:HF51310 4.9 34.3 1.0
OE1 B:HF51310 5.0 61.5 1.0

Hafnium binding site 10 out of 43 in 1o7t

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Hafnium binding site 10 out of 43 in the Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae.


Mono view


Stereo pair view

A full contact list of Hafnium with other atoms in the Hf binding site number 10 of Metal Nanoclusters Bound to the Ferric Binding Protein From Neisseria Gonorrhoeae. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Hf1310

b:99.5
occ:1.00
HFE B:HF51310 0.0 99.5 1.0
ODE B:HF51310 2.2 95.3 1.0
OAE B:HF51310 2.3 62.2 1.0
OE1 B:HF51310 2.4 61.5 1.0
OE3 B:HF51310 2.5 79.4 1.0
OE2 B:HF51310 2.6 99.5 1.0
OE4 B:HF51310 2.9 87.4 1.0
OAD B:HF51310 3.1 73.4 1.0
HFD B:HF51310 3.8 76.1 1.0
OAC B:HF51310 3.9 50.5 1.0
HFA B:HF51310 4.0 38.5 1.0
O B:HOH2214 4.6 49.2 1.0
O B:HOH2217 4.6 31.7 1.0
OA1 B:HF51310 4.7 51.3 1.0

Reference:

D.Alexeev, H.Zhu, M.Guo, W.Zhong, D.J.Hunter, W.Yang, D.J.Campopiano, P.J.Sadler. A Novel Protein-Mineral Interface. Nat. Struct. Biol. V. 10 297 2003.
ISSN: ISSN 1072-8368
PubMed: 12598891
DOI: 10.1038/NSB903
Page generated: Sun Dec 13 19:01:48 2020

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